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cdaR

YbbR-like domain-containing protein
genecdaR
locusRBAM_002290
feature type4. 4 Interaction with plants and growth
product4.4.3.1 transcriptomics
synonymsybbR
homologBSU01760
start200885
stop202324
direction+
length1440
essentialno
protein detected in LB4.4.3 Response to plants
Genomic Context

Functional category containing this gene/protein

CategoryMetabolism
Subcategory1nucleotide metabolism
Subcategory2metabolism of signalling nucleotides
Subcategory3

Phenotypes of a mutant

plant-bacteria interaction

transcription stimulated by root exudate

Expression and Regulation

Operons
cdaA-cdaR-glmM-glmS
Transcripts
Primary TSS
Secondary TSS
Internal TSS201473
Antisense TSS201054

Sigma factors

SigA

Protein regulator

Additional regulation

RNA regulation_mode

"glmS ribozyme, RNA cleavage"

This gene is a member of the following regulons

SigA Regulon
The protein


Catalyzed reaction/ biological activity
E.C. number
Protein family
Domains
Effectors of protein activity
Refer to BSU01760
Structure
Refer to BSU01760
Malonylation
Acetylation
Localization

Biological materials


Mutant
LacZ fusion
GFP fusion
FLAG-tag construct
Antibody
Additional information
"4. Lifestyles

References


Fan B, Carvalhais, LC, Becker, A, Fedoseyenko D,

Transcriptomic profiling of Bacillus amyloliquefaciens FZB42 in response to maize root exudates

BMC Microbiol. 2012 Jun 21;12:116. doi: 10.1186/1471-2180-12-116.;PMID:22720735