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cdaR

effector protein controlling CdaA diadenylate cyclase activity
genecdaR
locus (old tag)RBAM_RS01145 (RBAM_002290)
feature typeCDS_with protein
productWP_011996221.1; YbbR-like domain-containing protein
synonymsybbR
homologBSU01760
start200885
stop202324
direction+
length1440
essentialno
protein detection in LByes
Genomic Context

Functional category containing this gene/protein

CategoryMetabolism
Subcategory1nucleotide metabolism
Subcategory2metabolism of signalling nucleotides
Subcategory3

Phenotypes of a mutant

plant-bacteria interaction

transcription stimulated by root exudate

Expression and Regulation

Operons
cdaA-cdaR-glmM-glmS
Transcripts
Primary TSS
Secondary TSS
Internal TSS201473
Antisense TSS201054

Sigma factors

SigA

Protein regulator

Additional regulation

RNA regulation_mode

glmS ribozyme, RNA cleavage

This gene is a member of the following regulons

SigA Regulon
The protein


Catalyzed reaction/ biological activity
E.C. number
Protein family
Domains
Effectors of protein activity
Refer to BSU01760
Structure
Refer to BSU01760
Modification
Acetylation
Localization

Biological materials


Mutant
LacZ fusion
GFP fusion
FLAG-tag construct
Antibody
Additional information
4. Lifestyles 4. 4 Interaction with plants and growth competitors 4.4.3 Response to plants 4.4.3.1 transcriptomics 4.4.3.1.1 stimulation by root exudate

References


Fan B, Carvalhais, LC, Becker, A, Fedoseyenko D,

Transcriptomic profiling of Bacillus amyloliquefaciens FZB42 in response to maize root exudates

BMC Microbiol. 2012 Jun 21;12:116. doi: 10.1186/1471-2180-12-116.;PMID:22720735