| gene | colB |
| locus | RBAM_007750 |
| feature type | CDS |
| product | ABS73159.2 collagen-like protein |
| synonyms | clpB |
| homolog | |
| start | 764555 |
| stop | 766570 |
| direction | + |
| length | 1998 |
| essential | |
| protein detected in LB | not detected |
Functional category containing this gene/protein
| Category | Lifestyles |
| Subcategory1 | Interaction with plants and growth competitor |
| Subcategory2 | motility and colonization of plant surfaces |
| Subcategory3 | colonization of roots |
Phenotypes of a mutant
plant-bacteria interaction
| adhesion to root surface and biofilm formation. RNA synthesis stimulated by root exudate |
Expression and Regulation
| Primary TSS | 764533 |
| Secondary TSS | |
| Internal TSS | 766484 |
| Antisense TSS | 766390 |
Sigma factors
Protein regulator
Additional regulation
RNA regulation_mode
This gene is a member of the following regulons
Biological materials
| no ortholog in B. subtilis 168 |
References
Zhao X, Wang R, Shang Q, Hao H, Li Y, Zhang Y, Gu
Microbiol Res. 2016 Mar;184:25-31. doi: 10.1016/j.micres.2015.12.004. Epub 2015 Dec 23;PMID:26856450Zhao, X., Wang, Y., Shang, Q., et al.
Collagen-Like Proteins (ClpA, ClpB, ClpC,and ClpD) are required for biofilm formation and adhesion to plant roots by Bacillus amyloliquefaciens FZB42.
PLoS One 10, e0117414. 2015Fan B, Li L, Chao Y, F?rstner K, Vogel J, Borriss
dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42.
PLoS One. 2015 Nov 5;10(11):e0142002. doi: 10.1371/journal.pone.0142002. eCollection 2015. PMID: 26540162