Home Categories Regulon list Genes not in 168 Interaction with Plants Reference Resourses
Login


colD

GXT repeat-containing collagen-like protein
genecolD
locus (old tag)RBAM_RS03885 (RBAM_007770)
feature typeCDS_with protein
productWP_012117058.1; hypothetical protein
synonymsclpD
homolog
start768125
stop769504
direction+
length1380
essential
protein detection in LByes
Genomic Context

Functional category containing this gene/protein

Category4. Lifestyles
Subcategory14. 4 Interaction with plants and growth competitor
Subcategory24.4.1 motility and colonization of plant surfaces
Subcategory34.4.1.1 colonization of roots

Phenotypes of a mutant

plant-bacteria interaction

Adhesion to root surface and biofilm formation. RNA synthesis stimulated by root exudate

Expression and Regulation

Operons
Transcripts
Primary TSS767997
Secondary TSS768113
Internal TSS
Antisense TSS

Sigma factors

Protein regulator

Additional regulation

RNA regulation_mode

This gene is a member of the following regulons

The protein


Catalyzed reaction/ biological activity
E.C. number
Protein family
Domains
Effectors of protein activity
Structure
Modification
Acetylation
Localization

Biological materials


Mutant
LacZ fusion
GFP fusion
FLAG-tag construct
Antibody
Additional information
equired for biofilm formation and adhesion to plant surfaces, no ortholog in B. subtilis 168

References


Fan B, Li L, Chao Y, F?rstner K, Vogel J, Borriss

dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42.

PLoS One. 2015 Nov 5;10(11):e0142002. doi: 10.1371/journal.pone.0142002. eCollection 2015. PMID: 26540162