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degR

activation of degradative enzymes (aprE, nprE, sacB) production or activity
genedegR
productactivation of degradative enzymes (aprE, nprE, sacB) production or activity
locusRBAM_020080
synonymsprtR
homologBSU21940
start2113788
stop2113970
direction-
length183
essentialno
Expressed protein
Standard condition
Genomic Context

Functional containing this gene/protein

CategoryInformation processing
Subcategory1regulation of gene expression
Subcategory2transcription factors and their control
Subcategory3control of two-component response regulators

Phenotypes of a mutant

plant-bacteria interaction

transcription stimulated by root exudate

Expression and Regulation

Operons
Refer to BSU21940
Transcripts
Primary TSS2113987
Secondary TSS2114038
Internal TSS
Antisense TSS

Sigma factors

SigD

Protein regulator

Additional regulation

RNA regulation_mode

This gene is a member of the following regulons

SigD Regulon
The protein


Catalyzed reaction/ biological activity
E.C. number
Protein family
Domains
Effectors of protein activity
Refer to BSU21940
Structure
Refer to BSU21940
Modification
Acetylation
Localization

Biological materials


Mutant
LacZ fusion
GFP fusion
FLAG-tag construct
Antibody
Additional information
4. Lifestyles 4. 4 Interaction with plants and growth competitors 4.4.3 Response to plants 4.4.3.1 transcriptomics 4.4.3.1.1 stimulation by root exudate

References


Fan B, Carvalhais, LC, Becker, A, Fedoseyenko D,

Transcriptomic profiling of Bacillus amyloliquefaciens FZB42 in response to maize root exudates

BMC Microbiol. 2012 Jun 21;12:116. doi: 10.1186/1471-2180-12-116.;PMID:22720735