| gene | rocD |
| locus | RBAM_037250 |
| feature type | CDS |
| product | ABS76054.1 ornithine--oxo-acid transaminase |
| synonyms | |
| homolog | BSU40340 |
| start | 3834073 |
| stop | 3835278 |
| direction | - |
| length | 1206 |
| essential | |
| protein detected in LB | not detected |
Functional category containing this gene/protein
| Category | Metabolism |
| Subcategory1 | amino acid/ nitrogen metabolism |
| Subcategory2 | utilization of amino acids |
| Subcategory3 | utilization of arginine/ ornithine |
Phenotypes of a mutant
plant-bacteria interaction
| transcription stimulated by root exudate |
Expression and Regulation
| rocD-rocE-rocF |
| Primary TSS | 3835289 |
| Secondary TSS | |
| Internal TSS | 3834747 |
| Antisense TSS | 3834809 |
Sigma factors
| SigL |
Protein regulator
| AhrC activation CodY repression RocR activation Spo0A repression |
Additional regulation
RNA regulation_mode
This gene is a member of the following regulons
| SigL Regulon |
| Refer to BSU40340 |
| Refer to BSU40340 |
| K360 |
| "K69,323,335,358,367" |
Biological materials
References
Fan B, Li Y, Li L, P X,Bu C,Wu X, Borriss R.
J Proteomics. 2017 Feb 10;154:1-12. doi: 10.1016/j.jprot.2016.11.022;PMID:27939684Liu L, Wang G, Song L, Lv B, Liang W
Sci Rep. 2016 Jan 29;6:20108. doi: 10.1038/srep20108;PMID:26822828Fan B, Carvalhais, LC, Becker, A, Fedoseyenko D,
Transcriptomic profiling of Bacillus amyloliquefaciens FZB42 in response to maize root exudates
BMC Microbiol. 2012 Jun 21;12:116. doi: 10.1186/1471-2180-12-116.;PMID:22720735