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rplD

ribosomal protein
generplD
locus (old tag)RBAM_RS00720 (RBAM_001420)
feature typeCDS_with protein
productWP_007615239.1; 50S ribosomal protein L4
synonyms
homologBSU01170
start137101
stop137724
direction+
length624
essentialyes
protein detection in LByes
Genomic Context

Functional category containing this gene/protein

CategoryInformation processing
Subcategory1protein synthesis, modification and degradation
Subcategory2translation
Subcategory3ribosomal proteins

Phenotypes of a mutant

plant-bacteria interaction

transcription (RNA synthesis) stimulated by root exudate

Expression and Regulation

Operons
rpsJ-rplC-rplD-rplW-rplB-rpsS-
Transcripts
Primary TSS
Secondary TSS
Internal TSS
Antisense TSS137463

Sigma factors

SigA

Protein regulator

Additional regulation

stringent response, negative regulation

RNA regulation_mode

This gene is a member of the following regulons

SigA Regulon
The protein


Catalyzed reaction/ biological activity
E.C. number
Protein family
Domains
Effectors of protein activity
Refer to BSU01170
Structure
Refer to BSU01170
Modification
K144,150,196,201
Acetylation
K100,196
Localization

Biological materials


Mutant
LacZ fusion
GFP fusion
FLAG-tag construct
Antibody
Additional information
4. Lifestyles 4. 4 Interaction with plants and growth competitors 4.4.3 Response to plants 4.4.3.1 transcriptomics 4.4.3.1.1 stimulation by root exudate

References


Fan B, Li Y, Li L, P X,Bu C,Wu X, Borriss R.

Malonylome analysis of rhizobacterium Bacillus amyloliquefaciens FZB42 reveals involvement of lysine malonylation in polyketide synthesis and plant-bacteria interactions

J Proteomics. 2017 Feb 10;154:1-12. doi: 10.1016/j.jprot.2016.11.022;PMID:27939684

Liu L, Wang G, Song L, Lv B, Liang W

Acetylome analysis reveals the involvement of lysine acetylation in biosynthesis of antibiotics in Bacillus amyloliquefaciens.

Sci Rep. 2016 Jan 29;6:20108. doi: 10.1038/srep20108;PMID:26822828

Fan B, Carvalhais, LC, Becker, A, Fedoseyenko D,

Transcriptomic profiling of Bacillus amyloliquefaciens FZB42 in response to maize root exudates

BMC Microbiol. 2012 Jun 21;12:116. doi: 10.1186/1471-2180-12-116.;PMID:22720735

Fan B, Li L, Chao Y, F?rstner K, Vogel J, Borriss

dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42.

PLoS One. 2015 Nov 5;10(11):e0142002. doi: 10.1371/journal.pone.0142002. eCollection 2015. PMID: 26540162