| gene | rplD |
| locus | RBAM_001420 |
| feature type | 4. 4 Interaction with plants and growth |
| product | 4.4.3.1 transcriptomics |
| synonyms | |
| homolog | BSU01170 |
| start | 137101 |
| stop | 137724 |
| direction | + |
| length | 624 |
| essential | yes |
| protein detected in LB | 4.4.3 Response to plants |
Functional category containing this gene/protein
| Category | Information processing |
| Subcategory1 | "protein synthesis, modification and degradation" |
| Subcategory2 | translation |
| Subcategory3 | ribosomal proteins |
Phenotypes of a mutant
plant-bacteria interaction
| transcription (RNA synthesis) stimulated by root exudate |
Expression and Regulation
| rpsJ-rplC-rplD-rplW-rplB-rpsS- |
| Primary TSS | |
| Secondary TSS | |
| Internal TSS | |
| Antisense TSS | 137463 |
Sigma factors
| SigA |
Protein regulator
Additional regulation
| "stringent response, negative regulation" |
RNA regulation_mode
This gene is a member of the following regulons
| SigA Regulon |
| Refer to BSU01170 |
| Refer to BSU01170 |
| "K144,150,196,201" |
| "K100,196" |
Biological materials
| "4. Lifestyles |
References
Fan B, Li Y, Li L, P X,Bu C,Wu X, Borriss R.
J Proteomics. 2017 Feb 10;154:1-12. doi: 10.1016/j.jprot.2016.11.022;PMID:27939684Liu L, Wang G, Song L, Lv B, Liang W
Sci Rep. 2016 Jan 29;6:20108. doi: 10.1038/srep20108;PMID:26822828Fan B, Carvalhais, LC, Becker, A, Fedoseyenko D,
Transcriptomic profiling of Bacillus amyloliquefaciens FZB42 in response to maize root exudates
BMC Microbiol. 2012 Jun 21;12:116. doi: 10.1186/1471-2180-12-116.;PMID:22720735Fan B, Li L, Chao Y, F?rstner K, Vogel J, Borriss
PLoS One. 2015 Nov 5;10(11):e0142002. doi: 10.1371/journal.pone.0142002. eCollection 2015. PMID: 26540162