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trmU

tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
genetrmU
producttRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
locusRBAM_024610
synonymsyrrA
homologBSU27500
start2580047
stop2581162
direction-
length1116
essentialno
Expressed protein
Standard condition
Genomic Context

Functional containing this gene/protein

CategoryInformation processing
Subcategory1"protein synthesis, modification and degradation"
Subcategory2translation
Subcategory3tR#N/A modification and maturation

Phenotypes of a mutant

plant-bacteria interaction

transcription stimulated by root exudate

Expression and Regulation

Operons
cymR-yrvO-trmU
Transcripts
Primary TSS
Secondary TSS
Internal TSS
Antisense TSS

Sigma factors

SigA

Protein regulator

Additional regulation

"stringent response, negative regulation"

RNA regulation_mode

This gene is a member of the following regulons

SigA Regulon
The protein


Catalyzed reaction/ biological activity
E.C. number
Protein family
Domains
Effectors of protein activity
Refer to BSU27500
Structure
Refer to BSU27500
Modification
Acetylation
Localization

Biological materials


Mutant
LacZ fusion
GFP fusion
FLAG-tag construct
Antibody
Additional information
4. Lifestyles 4. 4 Interaction with plants and growth competitors 4.4.3 Response to plants 4.4.3.1 transcriptomics

References


Fan B, Carvalhais, LC, Becker, A, Fedoseyenko D,

Transcriptomic profiling of Bacillus amyloliquefaciens FZB42 in response to maize root exudates

BMC Microbiol. 2012 Jun 21;12:116. doi: 10.1186/1471-2180-12-116.;PMID:22720735