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trmU

tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
genetrmU
locus (old tag)RBAM_RS12260 (RBAM_024610)
feature typeCDS_with protein
productWP_012118077.1; tRNA 2-thiouridine(34) synthase MnmA
synonymsyrrA
homologBSU27500
start2580047
stop2581162
direction-
length1116
essentialno
protein detection in LByes
Genomic Context

Functional category containing this gene/protein

CategoryInformation processing
Subcategory1protein synthesis, modification and degradation
Subcategory2translation
Subcategory3tR#N/A modification and maturation

Phenotypes of a mutant

plant-bacteria interaction

transcription stimulated by root exudate

Expression and Regulation

Operons
cymR-yrvO-trmU
Transcripts
Primary TSS
Secondary TSS
Internal TSS
Antisense TSS

Sigma factors

SigA

Protein regulator

Additional regulation

stringent response, negative regulation

RNA regulation_mode

This gene is a member of the following regulons

SigA Regulon
The protein


Catalyzed reaction/ biological activity
E.C. number
Protein family
Domains
Effectors of protein activity
Refer to BSU27500
Structure
Refer to BSU27500
Modification
Acetylation
Localization

Biological materials


Mutant
LacZ fusion
GFP fusion
FLAG-tag construct
Antibody
Additional information
4. Lifestyles 4. 4 Interaction with plants and growth competitors 4.4.3 Response to plants 4.4.3.1 transcriptomics

References


Fan B, Carvalhais, LC, Becker, A, Fedoseyenko D,

Transcriptomic profiling of Bacillus amyloliquefaciens FZB42 in response to maize root exudates

BMC Microbiol. 2012 Jun 21;12:116. doi: 10.1186/1471-2180-12-116.;PMID:22720735