Home Categories Regulon list Genes not in 168 Interaction with Plants Reference Resourses
Login


yngG

putative hydroxymethylglutaryl-CoA lyase
geneyngG
productputative hydroxymethylglutaryl-CoA lyase
locusRBAM_018350
synonyms
homologBSU18230
start1923752
stop1924651
direction-
length900
essential
Expressed protein
Standard condition
Genomic Context

Functional containing this gene/protein

CategoryMetabolism
Subcategory1amino acid/ nitrogen metabolism
Subcategory2utilization of amino acids
Subcategory3utilization of branched-chain amino acids

Phenotypes of a mutant

plant-bacteria interaction

transcription repressed by root exudate and stimulated by rice seedlings

Expression and Regulation

Operons
yngJ-yngI-yngH-yngHB-yngG-yngF
Transcripts
Primary TSS
Secondary TSS
Internal TSS
Antisense TSS

Sigma factors

SigE

Protein regulator

Additional regulation

RNA regulation_mode

This gene is a member of the following regulons

SigE Regulon
The protein


Catalyzed reaction/ biological activity
E.C. number
Protein family
Domains
Effectors of protein activity
Refer to BSU18230
Structure
Refer to BSU18230
Modification
Acetylation
Localization

Biological materials


Mutant
LacZ fusion
GFP fusion
FLAG-tag construct
Antibody
Additional information
4. Lifestyles 4. 4 Interaction with plants and growth competitors 4.4.3 Response to plants 4.4.3.1 transcriptomics 4.4.3.2.3 suppression by root exudate, 4.4.3.1.2 stimulation by plant seedlings

References


Fan B, Carvalhais, LC, Becker, A, Fedoseyenko D,

Transcriptomic profiling of Bacillus amyloliquefaciens FZB42 in response to maize root exudates

BMC Microbiol. 2012 Jun 21;12:116. doi: 10.1186/1471-2180-12-116.;PMID:22720735

Xie S, Wu H, Chen L, Zang H, Xie Y, Gao X

Transcriptome profiling of Bacillus subtilis OKB105 in response to rice seedlings

BMC Microbiology (2015) 15:21