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yrkD

geneyrkD
product
locusRBAM_005420
synonyms
homologBSU26550
start523350
stop523610
direction+
length261
essentialno
Genomic Context

Functional containing this gene/protein

CategoryGroups of genes
Subcategory1proteins of unknown function
Subcategory2NA
Subcategory3

Phenotypes of a mutant

plant-bacteria interaction

transcription repressed by root exudate

Expression and Regulation

Operons
Refer to BSU26550
Transcripts
Primary TSS523250
Secondary TSS
Internal TSS
Antisense TSS

Sigma factors

Protein regulator

Additional regulation

RNA regulation_mode

This gene is a member of the following regulons

The protein


Catalyzed reaction/ biological activity
E.C. number
Protein family
Domains
Effectors of protein activity
Refer to BSU26550
Structure
Refer to BSU26550
Modification
Acetylation
K6
Localization

Biological materials


Mutant
LacZ fusion
GFP fusion
FLAG-tag construct
Antibody
Additional information
4. Lifestyles 4. 4 Interaction with plants and growth competitors 4.4.3 Response to plants 4.4.3.1 transcriptomics 4.4.3.1.3 suppression by root exudate

References


Liu L, Wang G, Song L, Lv B, Liang W

Acetylome analysis reveals the involvement of lysine acetylation in biosynthesis of antibiotics in Bacillus amyloliquefaciens.

Sci Rep. 2016 Jan 29;6:20108. doi: 10.1038/srep20108;PMID:26822828

Fan, B., et al.,

Transcriptomic profiling of Bacillus amyloliquefaciens FZB42 in response to maize root exudates. BMC Microbiol, 2012. 12: p. 116.

BMC Microbiol, 2012. 12: p. 116.